HALathon 2021 UPPA

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1. Diogo S.B. Dias, Lizeth Y.A. Jaramillo, Douglas Guedes, Robert Duran, Anne Carbon, et al.. Assessment of acid mist on mortar biodeterioration simulating the wall of Jardim da Princesa, the National Museum of Rio de Janeiro, Brazil. International Biodeterioration and Biodegradation, Elsevier, 2021, 157, pp.105155. ⟨10.1016/j.ibiod.2020.105155⟩. ⟨hal-03094901⟩
2. Bang Liu, Jun Yao, Bo Ma, Zhihui Chen, Chenchen Zhao, et al.. Microbial community profiles in soils adjacent to mining and smelting areas: Contrasting potentially toxic metals and co-occurrence patterns. Chemosphere, Elsevier, 2021, 282, pp.130992. ⟨10.1016/j.chemosphere.2021.130992⟩. ⟨hal-03263052⟩
3. Joyce Álvarez-Barragán, Cristiana Cravo-Laureau, Lukas Wick, Robert Duran. Fungi in PAH-contaminated marine sediments: Cultivable diversity and tolerance capacity towards PAH. Marine Pollution Bulletin, Elsevier, 2021, 164, pp.112082. ⟨10.1016/j.marpolbul.2021.112082⟩. ⟨hal-03134053⟩
4. Jian-Li Liu, Jun Yao, Xiaozhe Zhu, De-Liang Zhou, Robert Duran, et al.. Metagenomic exploration of multi-resistance genes linked to microbial attributes in active nonferrous metal(loid) tailings. Environmental Pollution, Elsevier, 2021, 273, pp.115667. ⟨10.1016/j.envpol.2020.115667⟩. ⟨hal-03134048⟩
5. Pabel Cervantes-Avilés, César Augusto Caretta, Elcia Margareth Souza Brito, Pierre Bertin, Germán Cuevas-Rodríguez, et al.. Changes in bacterial diversity of activated sludge exposed to titanium dioxide nanoparticles. Biodegradation, Springer Verlag, 2021, 32, pp.313-326. ⟨10.1007/s10532-021-09939-w⟩. ⟨hal-03202940⟩
6. Luz Elena Palma‐cano, Hilda Piñon‐castillo, Socorro Tarango‐rivero, Anne Carbon, Joan Salas‐leiva, et al.. Effect of organic and conventional farming on soil bacterial diversity of pecan tree ( Carya illinoensis K. Kosh) orchard across two phenological stages. Letters in Applied Microbiology, Wiley, 2021, 72, pp.556-569. ⟨10.1111/lam.13452⟩. ⟨hal-03126884⟩
7. Hao Li, Jun Yao, Robert Duran, Jianli Liu, Ning Min, et al.. Toxic response of the freshwater green algae Chlorella pyrenoidosa to combined effect of flotation reagent butyl xanthate and nickel. Environmental Pollution, Elsevier, 2021, 286, pp.117285. ⟨10.1016/j.envpol.2021.117285⟩. ⟨hal-03237415⟩
8. Jihai Gu, Jun Yao, Robert Duran, Geoffrey Sunahara, Xiaoqi Zhou. Alteration of mixture toxicity in nonferrous metal mine tailings treated by biochar. Journal of Environmental Management, Elsevier, 2020, 265, pp.110511. ⟨10.1016/j.jenvman.2020.110511⟩. ⟨hal-02922922⟩
9. Jihai Gu, Jun Yao, Robert Duran, Geoffrey Sunahara. Comprehensive genomic and proteomic profiling reveal Acinetobacter johnsonii JH7 responses to Sb(III) toxicity. Science of the Total Environment, Elsevier, 2020, 748, pp.141174. ⟨10.1016/j.scitotenv.2020.141174⟩. ⟨hal-02922935⟩
10. Hao Li, Jun Yao, Robert Duran, Beenish Roha, Nuray Karapınar, et al.. Effects of typical flotation reagent on microbial toxicity and nickel bioavailability in soil. Chemosphere, Elsevier, 2020, 240, pp.124913. ⟨10.1016/j.chemosphere.2019.124913⟩. ⟨hal-02319880⟩
11. Fida Ben Salem, Olfa Ben Saïd, Cristiana Cravo-Laureau, Ezzeddine Mahmoudi, Noëlle Bru, et al.. Bacterial community assemblages in sediments under high anthropogenic pressure at Ichkeul Lake/Bizerte Lagoon hydrological system, Tunisia. Environmental Pollution, Elsevier, 2019, 252, pp.644-656. ⟨10.1016/j.envpol.2019.05.146⟩. ⟨hal-02170012⟩
12. Teodor Stoichev, Robert Duran, Alberto de Diego, Vitor Vasconcelos. Modelling phaeopigments concentrations in water from a shallow mesotrophic lagoon. Water environment research, Water Environment Federation, 2019, ⟨10.1002/wer.1255⟩. ⟨hal-02320482⟩
13. Jihai Gu, Geoffrey Sunahara, Robert Duran, Jun Yao, Yongqiang Cui, et al.. Sb(III)-resistance mechanisms of a novel bacterium from non-ferrous metal tailings. Ecotoxicology and Environmental Safety, Elsevier, 2019, 186, pp.109773. ⟨10.1016/j.ecoenv.2019.109773⟩. ⟨hal-02319866⟩
14. Vanessa Rouaud, Nicolas Susperregui, Anne Fahy, Rémy Guyoneaud, Sabrina Bichon, et al.. Dynamics of microbial communities across the three domains of life over an annual cycle with emphasis on marine mucilage in the Southern Bay of Biscay resolved by microbial fingerprinting. Continental Shelf Research, Elsevier, 2019, 186, pp.127-137. ⟨10.1016/j.csr.2019.06.003⟩. ⟨hal-02165465⟩
15. Vitor Silva Liduino, Cristiana Cravo-Laureau, Cyril Noel, Anne Carbon, Robert Duran, et al.. Comparison of flow regimes on biocorrosion of steel pipe weldments: Community composition and diversity of biofilms. International Biodeterioration and Biodegradation, Elsevier, 2019, 143, pp.104717. ⟨10.1016/j.ibiod.2019.104717⟩. ⟨hal-02330390⟩
16. Jianli Liu, Jun Yao, Geoffrey Sunahara, Fei Wang, Zifu Li, et al.. Nonferrous metal (loid) s mediate bacterial diversity in an abandoned mine tailing impoundment. Environmental Science and Pollution Research, Springer Verlag, 2019, 26 (24), pp.24806-24818. ⟨10.1007/s11356-019-05092-3⟩. ⟨hal-02282722⟩
17. Jian-Li Liu, Jun Yao, Chao Lu, Hao Li, Zi-Fu Li, et al.. Microbial activity and biodiversity responding to contamination of metal(loid) in heterogeneous nonferrous mining and smelting areas. Chemosphere, Elsevier, 2019, 226, pp.659-667. ⟨10.1016/j.chemosphere.2019.03.051⟩. ⟨hal-02094988⟩
18. Hao Li, Jun Yao, Jihai Gu, Robert Duran, Beenish Roha, et al.. Microcalorimetry and enzyme activity to determine the effect of nickel and sodium butyl xanthate on soil microbial community. Ecotoxicology and Environmental Safety, Elsevier, 2018, 163, pp.577 - 584. ⟨10.1016/j.ecoenv.2018.07.108⟩. ⟨hal-01859836⟩
19. M.S. Athie-García, H.A. Piñón-Castillo, L.N. Muñoz-Castellanos, A.L. Ulloa-Ogaz, P.I. Martínez-Varela, et al.. Cell wall damage and oxidative stress in Candida albicans ATCC10231 and Aspergillus niger caused by palladium nanoparticles. Toxicology in Vitro, Elsevier, 2018, 48, pp.111-120. ⟨10.1016/j.tiv.2018.01.006⟩. ⟨hal-01712794⟩
20. Miguel Medrano-Santillana, Elcia Margaret Souza-Brito, Robert Duran, Felix Gutierrez-Corona, Georgina Elena Reyna-Lopez. Bacterial diversity in fumarole environments of the Paricutin volcano, Michoacan (Mexico). Extremophiles, Springer Verlag, 2017, 21, pp.499-511. ⟨10.1007/s00792-017-0920-8⟩. ⟨hal-01515455⟩
21. K. Rachedi, F. Zermane, R. Tir, F.Z. Ayache, R. Duran, et al.. Characterization of tribenuron-methyl resistant Actinobacteria strains. Asian Journal of Microbiology, Biotechnology and Environmental Sciences, Global Science Publ., 2017, 19 (1), pp.81-87. ⟨hal-01631841⟩
22. A.L. Ulloa-Ogaz, H.A. Piñón-Castillo, L.N. Muñoz-Castellanos, M.S. Athie-García, M.D.L. Ballinas-Casarrubias, et al.. Oxidative damage to Pseudomonas aeruginosa ATCC 27833 and Staphylococcus aureus ATCC 24213 induced by CuO-NPs. Environmental Science and Pollution Research, Springer Verlag, 2017, 24 (27), pp.22048-22060. ⟨10.1007/s11356-017-9718-6⟩. ⟨hal-01712844⟩
23. J.M. Bodoque, J. Ladera, J.L. Yela, J. Alonso-Azcárate, Daniel Brito, et al.. Recovering hydromorphological functionality to improve natural purification capacity of a highly human-modified wetland. Ecological Engineering, Elsevier, 2017, 103, pp.332--343. ⟨10.1016/j.ecoleng.2016.02.013⟩. ⟨hal-01563516⟩
24. Samuel Teissier, Eléonore Attard, Béatrice Lauga, Robert Duran, Frédéric Julien, et al.. Biodiversity and ecosystem purification service in an alluvial wetland. Ecological Engineering, Elsevier, 2017, 103B, pp.359-371. ⟨10.1016/j.ecoleng.2016.02.019⟩. ⟨hal-01500060⟩
25. Rabia-Boukhalfa Yamina Hadj, Yannick Eveno, Solange Karama, Okba Selama, Béatrice Lauga, et al.. Isolation, purification and chemical characterization of a new angucyclinone compound produced by a new halotolerant Nocardiopsis sp. HR-4 strain. World Journal of Microbiology and Biotechnology, Springer Verlag, 2017, 33, pp.126. ⟨10.1007/s11274-017-2292-8⟩. ⟨hal-01530949⟩
26. P. Cervantes-Avilés, E.M.S. Brito, R. Duran, A.B. Martínez, G. Cuevas-Rodríguez. Effect of ZnO nanoparticles in the oxygen uptake during aerobic wastewater treatment. Journal of Nanoparticle Research, Springer Verlag, 2016, 18 (7), ⟨10.1007/s11051-016-3481-3⟩. ⟨hal-01498743⟩
27. Fida Ben Salem, Olfa Ben Saïd, Robert Duran, Mathilde Monperrus. Validation of an Adapted QuEChERS Method for the Simultaneous Analysis of Polycyclic Aromatic Hydrocarbons, Polychlorinated Biphenyls and Organochlorine Pesticides in Sediment by Gas Chromatography–Mass Spectrometry. Bulletin of Environmental Contamination and Toxicology, Springer Verlag, 2016, 96 (5), pp.678--684. ⟨10.1007/s00128-016-1770-2⟩. ⟨hal-01494461⟩
28. Benjamin Misson, Cédric Garnier, Béatrice Lauga, Duc Huy Dang, Jean-François Ghiglione, et al.. Chemical multi-contamination drives benthic prokaryotic diversity in the anthropized Toulon Bay. Science of the Total Environment, Elsevier, 2016, 556, pp.319 - 329. ⟨10.1016/j.scitotenv.2016.02.038⟩. ⟨hal-01826037⟩
29. A. Paule, V. Roubeix, G.D.W. Swerhone, J. Roy, B. Lauga, et al.. Comparative responses of river biofilms at the community level to common organic solvent and herbicide exposure. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (5), pp.4282--4293. ⟨10.1007/s11356-015-5141-z⟩. ⟨hal-01495528⟩
30. Fida Ben Salem, Olfa Ben Said, Patricia Aissa, Ezzeddine Mahmoudi, Mathilde Monperrus, et al.. Pesticides in Ichkeul Lake–Bizerta Lagoon Watershed in Tunisia: use, occurrence, and effects on bacteria and free-living marine nematodes. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (1), pp.36-48. ⟨10.1007/s11356-015-4991-8⟩. ⟨hal-01982027⟩
31. C. Liénart, Nicolas Susperregui, V. Rouaud, Joana Cavalheiro, V. David, et al.. Dynamics of particulate organic matter in a coastal system characterized by the occurrence of marine mucilage – A stable isotope study. Journal of Sea Research (JSR), Elsevier, 2016, 116, pp.12--22. ⟨10.1016/j.seares.2016.08.001⟩. ⟨hal-01495435⟩
32. Cécile Militon, Alexandre Atkinson, Valerie Michotey, Celine Jeziorski, Cristiana Cravo-Laureau, et al.. Metatranscriptomes of oil-contaminated marine coastal sediment affected by oil addition and/or by the bioturbating activity of the marine polychaete Hediste diversicolor: Who are the microbial players?. Marine Genomics, Elsevier, 2016, 29, pp.55-59. ⟨10.1016/j.margen.2016.06.006⟩. ⟨hal-01408732⟩
33. J. Abella, A. Bielen, L. Huang, T.O. Delmont, D. Vujaklija, et al.. Integron diversity in marine environments. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15360-15369. ⟨10.1007/s11356-015-5085-3⟩. ⟨hal-01631804⟩
34. R. Duran, A. Bielen, T. Paradžik, C. Gassie, E. Pustijanac, et al.. Exploring Actinobacteria assemblages in coastal marine sediments under contrasted Human influences in the West Istria Sea, Croatia. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15215-15229. ⟨10.1007/s11356-015-4240-1⟩. ⟨hal-01631805⟩
35. A. Guermouche M’rassi, F. Bensalah, J. Gury, Robert Duran. Isolation and characterization of different bacterial strains for bioremediation of n-alkanes and polycyclic aromatic hydrocarbons. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15332-15346. ⟨10.1007/s11356-015-4343-8⟩. ⟨hal-01712845⟩
36. M. Stauffert, Cristiana Cravo-Laureau, R. Duran. Dynamic of sulphate-reducing microorganisms in petroleum-contaminated marine sediments inhabited by the polychaete Hediste diversicolor. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15273-15284. ⟨10.1007/s11356-014-3624-y⟩. ⟨hal-01631842⟩
37. A. Fahy, L. Giloteaux, P. Bertin, D. Le Paslier, C. Médigue, et al.. 16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage. Microbial Ecology, Springer Verlag, 2015, 70 (1), pp.154-167. ⟨10.1007/s00248-014-0558-3⟩. ⟨hal-01631845⟩
38. O. Ben Said, Hela Louati, A. Soltani, Hugues Preud'Homme, Cristiana Cravo-Laureau, et al.. Changes of benthic bacteria and meiofauna assemblages during bio-treatments of anthracene-contaminated sediments from Bizerta lagoon (Tunisia). Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), p. 15319-15331. ⟨10.1007/s11356-015-4105-7⟩. ⟨hal-01631846⟩
39. Hela Louati, O.B. Said, A. Soltani, Cristiana Cravo-Laureau, R. Duran, et al.. Responses of a free-living benthic marine nematode community to bioremediation of a PAH mixture. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15307-15318. ⟨10.1007/s11356-014-3343-4⟩. ⟨hal-01631844⟩
40. Robert Duran, Patricia Bonin, Ronan Jezequel, Karine Dubosc, Claire Gassie, et al.. Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15248-15259. ⟨10.1007/s11356-015-4373-2⟩. ⟨hal-01201709⟩
41. Philippe Cuny, Franck Gilbert, Cécile Militon, Georges Stora, Patricia Bonin, et al.. Use of dispersant in mudflat oil-contaminated sediment: behavior and effects of dispersed oil on micro- and macrobenthos.. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15370-15376. ⟨10.1007/s11356-015-4800-4⟩. ⟨hal-01201710⟩
42. Denis Faure, Patricia Bonin, Robert Duran. Environmental microbiology reveals the Earth secret life.. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (18), pp.13573-6. ⟨hal-01201676⟩
43. E.M.S. Brito, N. Villegas-Negrete, I.A. Sotelo-González, C.A. Caretta, Marisol Goñi-Urriza, et al.. Microbial diversity in Los Azufres geothermal field (Michoacán, Mexico) and isolation of representative sulfate and sulfur reducers. Extremophiles, Springer Verlag, 2014, 18 (2), pp.385-398. ⟨10.1007/s00792-013-0624-7⟩. ⟨hal-01555841⟩
44. M. Stauffert, R. Duran, C. Gassie, Cristiana Cravo-Laureau. Response of Archaeal Communities to Oil Spill in Bioturbated Mudflat Sediments. Microbial Ecology, 2014, 67 (1), pp.108-119. ⟨10.1007/s00248-013-0288-y⟩. ⟨hal-01631847⟩
45. Florence Hakil, Oulfat Amin, Agnès Hirschler-Réa, Damien Mollex, Vincent Grossi, et al.. Desulfatiferula berrensis sp. nov., a n-alkene-degrading sulfate-reducing bacterium isolated from estuarine sediments.. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2014, 64 (Pt 2), pp.540-4. ⟨10.1099/ijs.0.057174-0⟩. ⟨hal-00976570⟩
46. Haithem Louati, O. Ben Said, A. Soltani, Cristiana Cravo-Laureau, Hugues Preud'Homme, et al.. Impacts of bioremediation schemes for the mitigation of a low-dose anthracene contamination on free-living marine benthic nematodes. Ecotoxicology, Springer Verlag, 2014, 23 (2), pp.201-212. ⟨10.1007/s10646-013-1163-9⟩. ⟨hal-01560342⟩
47. Haithem Louati, O.B. Said, A. Soltani, P. Got, Cristiana Cravo-Laureau, et al.. Biostimulation as an attractive technique to reduce phenanthrene toxicity for meiofauna and bacteria in lagoon sediment. Environmental Science and Pollution Research, Springer Verlag, 2014, 21 (5), pp.3670-3679. ⟨10.1007/s11356-013-2330-5⟩. ⟨hal-01631850⟩
48. Béatrice Lauga, N. Girardin, S. Karama, K. Le Menach, H. Budzinski, et al.. Removal of alachlor in anoxic soil slurries and related alteration of the active communities. Environmental Science and Pollution Research, Springer Verlag, 2013, 20 (2), pp.1089--1105. ⟨10.1007/s11356-012-0999-5⟩. ⟨hal-01546598⟩
49. E.M.S. Brito, H.A. Piñón-Castillo, R. Guyoneaud, C.A. Caretta, J.F. Gutiérrez-Corona, et al.. Bacterial biodiversity from anthropogenic extreme environments: A hyper-alkaline and hyper-saline industrial residue contaminated by chromium and iron. Applied Microbiology and Biotechnology, Springer Verlag, 2013, 97 (1), pp.369-378. ⟨10.1007/s00253-012-3923-5⟩. ⟨hal-01631884⟩
50. Isabelle Vitte, Robert Duran, Guillermina Hernandez Raquet, Julie Mounier, R. Jézéquel, et al.. Dynamics of metabolically active bacterial communities involved in PAH and toxicity elimination from oil-contaminated sludge during anoxic/oxic oscillations. Applied Microbiology and Biotechnology, Springer Verlag, 2013, 97 (9), pp.4199--4211. ⟨10.1007/s00253-012-4219-5⟩. ⟨hal-01546599⟩
51. P.-M. Chronopoulou, A. Fahy, F. Coulon, S. Païssé, Marisol Goñi-Urriza, et al.. Impact of a simulated oil spill on benthic phototrophs and nitrogen-fixing bacteria in mudflat mesocosms. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2013, 15 (1), pp.242--252. ⟨10.1111/j.1462-2920.2012.02864.x⟩. ⟨hal-01546600⟩
52. Armelle Paule, V. Roubeix, Beatrice Lauga, R. Duran, François Delmas, et al.. Changes in tolerance to herbicide toxicity throughout development stages of phototrophic biofilms. Aquatic Toxicology, Elsevier, 2013, 144-145, pp.310-321. ⟨hal-02599072⟩
53. Haithem Louati, O. Ben Said, A. Soltani, P. Got, E. Mahmoudi, et al.. The roles of biological interactions and pollutant contamination in shaping microbial benthic community structure. Chemosphere, Elsevier, 2013, 93 (10), pp.2535-2546. ⟨10.1016/j.chemosphere.2013.09.069⟩. ⟨hal-01631854⟩
54. Haithem Louati, O.B. Said, P. Got, A. Soltani, E. Mahmoudi, et al.. Microbial community responses to bioremediation treatments for the mitigation of low-dose anthracene in marine coastal sediments of Bizerte lagoon (Tunisia). Environmental Science and Pollution Research, Springer Verlag, 2013, 20 (1), pp.300--310. ⟨10.1007/s11356-012-0860-x⟩. ⟨hal-01546601⟩
55. O. Pringault, H. Viret, R. Duran. Interactions between Zn and bacteria in marine tropical coastal sediments. Environmental Science and Pollution Research, Springer Verlag, 2012, 19 (3), pp.879-892. ⟨10.1007/s11356-011-0621-2⟩. ⟨hal-01841776⟩
56. O.B. Said, Hela Louati, A. Soltani, E. Mahmoudi, Cristiana Cravo-Laureau, et al.. Vitro study of the impact of sédimentsartificiellement contaminated with anthracene: Effects on indigenous bacteria and the marine nematode [Étude in vitro de l'impact de sediments artificiellement contaminés par l'anthracène: Effets sur les bactéries indigènes et les nématodes libres marins]. Canadian journal of civil engineering, National Research Council Canada, 2012, 39 (5), pp.556-564. ⟨10.1139/L2012-036⟩. ⟨hal-01631856⟩
57. Cristiana Cravo-Laureau, G. Hernandez-Raquet, Isabelle Vitte, R. Jézéquel, V. Bellet, et al.. Role of environmental fluctuations and microbial diversity in degradation of hydrocarbons in contaminated sludge.. Research in Microbiology, Elsevier, 2011, 162 (9), pp.888-895. ⟨10.1016/j.resmic.2011.04.011⟩. ⟨hal-01631859⟩
58. L. Giloteaux, A. Solé, I. Esteve, R. Duran. Bacterial community composition characterization of a lead-contaminated Microcoleus sp. consortium. Environmental Science and Pollution Research, Springer Verlag, 2011, 18 (7), pp.1147-1159. ⟨10.1007/s11356-010-0432-x⟩. ⟨hal-01841777⟩
59. Isabelle Vitte, Robert Duran, Ronan Jézéquel, Pierre Caumette, Cristiana Cravo-Laureau. Effect of oxic/anoxic switches on bacterial communities and PAH biodegradation in an oil-contaminated sludge.. Environmental Science and Pollution Research, Springer Verlag, 2011, 18 (6), pp.1022-32. ⟨10.1007/s11356-010-0435-7⟩. ⟨hal-00907074⟩
60. Haithem Louati, O. Ben Said, A. Soltani, Ezzedine Mahmoudi, Cristiana Cravo-Laureau, et al.. Value of bioremediation for reducing the phenanthrene toxic effect on benthic communities of bacteria and free-iiving nematodes [Interet de la biorémediation dans la réduction de l'effet toxique du phénanthrène sur les communautés de bactéries et de nématodes libres benthiques]. Bulletin De La Societe Zoologique De France, 2011, 136 (1-4), pp.131-144. ⟨hal-01631860⟩
61. J. Maldonado, E. Diestra, L. Huang, A.M. Domènech, E. Villagrasa, et al.. Isolation and identification of a bacterium with high tolerance to lead and copper from a marine microbial mat in Spain. Annals of Microbiology, Springer, 2010, 60 (1), pp.113-120. ⟨10.1007/s13213-010-0019-2⟩. ⟨hal-01841778⟩
62. O. Pringault, H. Viret, R. Duran. Influence of microorganisms on the removal of nickel in tropical marine sediments (New Caledonia). Marine Pollution Bulletin, Elsevier, 2010, 61 (7-12), pp.530-541. ⟨10.1016/j.marpolbul.2010.06.038⟩. ⟨hal-01841779⟩
63. S. Païssé, M. Goñi-Urriza, F. Coulon, R. Duran. How a Bacterial Community Originating from a Contaminated Coastal Sediment Responds to an Oil Input. Microbial Ecology, 2010, 60 (2), pp.394-405. ⟨10.1007/s00248-010-9721-7⟩. ⟨hal-01631893⟩
64. O.B. Said, M. Goñi-Urriza, M.E. Bour, P. Aissa, R. Duran. Bacterial community structure of sediments of the bizerte lagoon (Tunisia), a southern mediterranean coastal anthropized lagoon. Microbial Ecology, 2010, 59 (3), pp.445-456. ⟨10.1007/s00248-009-9585-x⟩. ⟨hal-01631890⟩
65. M. Vercraene Eairmal, Beatrice Lauga, Stéphanie Saint-Laurent, Nicolas Mazzella, Sébastien Boutry, et al.. Diuron biotransformation and its effects on biofilm bacterial community structure. Chemosphere, Elsevier, 2010, 81, pp.837-843. ⟨10.1016/j.chemosphere.2010.08.014⟩. ⟨hal-02593785⟩
66. M. Ranchou-Peyruse, Mathilde Monperrus, Romain Bridou, R. Duran, David Amouroux, et al.. Overview of mercury methylation capacities among anaerobic bacteria including representatives of the sulphate-reducers: Implications for environmental studies. Geomicrobiology Journal, Taylor & Francis, 2009, 26 (1), pp.1-8. ⟨10.1080/01490450802599227⟩. ⟨hal-01841780⟩
67. J.B. Ramond, Thierry Berthe, R. Duran, F. Petit. Comparative effects of mercury contamination and wastewater effluent input on Gram-negative merA gene abundance in mudflats of an anthropized estuary (Seine, France): a microcosm approach. Research in Microbiology, Elsevier, 2009, 160, pp.10-18. ⟨10.1016/j.resmic.2008.10.004⟩. ⟨hal-00433902⟩
68. E.M.S. Brito, R. Duran, R. Guyoneaud, M. Goñi-Urriza, T. Oteyza, et al.. A case study of in situ oil contamination in a mangrove swamp (Rio De Janeiro, Brazil). Marine Pollution Bulletin, Elsevier, 2009, 58 (3), pp.418-423. ⟨10.1016/j.marpolbul.2008.12.008⟩. ⟨hal-01631894⟩
69. M. Dias, J.C. Salvado, Mathilde Monperrus, P. Caumette, David Amouroux, et al.. Characterization of Desulfomicrobium salsuginis sp. nov. and Desulfomicrobium aestuarii sp. nov., two new sulfate-reducing bacteria isolated from the Adour estuary (French Atlantic coast) with specific mercury methylation potentials. Systematic and Applied Microbiology, Elsevier, 2008, 31 (1), pp.30-37. ⟨10.1016/j.syapm.2007.09.002⟩. ⟨hal-00291946⟩
70. O. Pringault, R. Duran, S. Jacquet, J.-P. Torréton. Temporal variations of microbial activity and diversity in marine tropical sediments (New Caledonia Lagoon). Microbial Ecology, Springer Verlag, 2008, 55 (2), pp.247-258. ⟨10.1007/s00248-007-9272-8⟩. ⟨hal-01841781⟩
71. R. Duran, Magali Ranchou-Peyruse, V. Menuet, Mathilde Monperrus, G. Bareille, et al.. Mercury methylation by a microbial community from sediments of the Adour Estuary (Bay of Biscay, France). Environmental Pollution, Elsevier, 2008, 156 (3), pp.951-958. ⟨10.1016/j.envpol.2008.05.007⟩. ⟨hal-01557339⟩
72. O. Ben Said, M.S. Goñi-Urriza, M. El Bour, M. Dellali, P. Aissa, et al.. Characterization of aerobic polycyclic aromatic hydrocarbon-degrading bacteria from Bizerte lagoon sediments, Tunisia. Journal of Applied Microbiology, Wiley, 2008, 104 (4), pp.987-997. ⟨10.1111/j.1365-2672.2007.03621.x⟩. ⟨hal-01631898⟩
73. A. Fourçans, Anthony Ranchou-Peyruse, Pierre Caumette, R. Duran. Molecular analysis of the spatio-temporal distribution of sulfate-reducing bacteria (SRB) in Camargue (France) hypersaline microbial mat. Microbial Ecology, Springer Verlag, 2008, 56 (1), pp.90-100. ⟨10.1007/s00248-007-9327-x⟩. ⟨hal-01841782⟩
74. S. Bordenave, M. Goñi-Urriza, C. Vilette, S. Blanchard, Pierre Caumette, et al.. Diversity of ring-hydroxylating dioxygenases in pristine and oil contaminated microbial mats at genomic and transcriptomic levels. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2008, 10 (12), pp.3201-3211. ⟨10.1111/j.1462-2920.2008.01707.x⟩. ⟨hal-01631899⟩
75. O. Bruneel, N. Pascault, M. Egal, C. Bancon-Montigny, M.S. Goñi-Urriza, et al.. Archaeal diversity in a Fe-As rich acid mine drainage at Carnoulès (France). Extremophiles, Springer Verlag, 2008, 12 (4), pp.563-571. ⟨10.1007/s00792-008-0160-z⟩. ⟨hal-01631896⟩
76. Y. Dominique, B. Muresan, R. Duran, S. Richard, A. Boudou. Simulation of the chemical fate and bioavailability of liquid elemental mercury drops from gold mining in Amazonian freshwater systems. Environmental Science and Technology, American Chemical Society, 2007, 41 (21), pp.7322-7329. ⟨10.1021/es070268r⟩. ⟨hal-01841784⟩
77. Christelle Desnues, Valérie Michotey, Andrea Wieland, Cui Zhizang, Aude Fourçans, et al.. Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France). Water Research, IWA Publishing, 2007, 41, pp.3407-3419. ⟨hal-00165666⟩
78. Gilles Miralles, Vincent Grossi, Monique Acquaviva, Robert Duran, Jean Claude Bertrand, et al.. Alkane biodegradation and dynamics of phylogenetic subgroups of sulfate-reducing bacteria in an anoxic coastal marine sediment artificially contaminated with oil. Chemosphere, Elsevier, 2007, 68, pp.1327-1334. ⟨10.1016/j.chemosphere.2007.01.033⟩. ⟨hal-00171086⟩
79. H. Viret, O. Pringault, R. Duran. Impact of zinc and nickel on oxygen consumption of benthic microbial communities assessed with microsensors. Science of the Total Environment, Elsevier, 2006, 367 (1), pp.302-311. ⟨10.1016/j.scitotenv.2005.11.017⟩. ⟨hal-01841785⟩
80. G. Hernandez-Raquet, H. Budzinski, Pierre Caumette, P. Dabert, K. Le Ménach, et al.. Molecular diversity studies of bacterial communities of oil polluted microbial mats from the Etang de Berre (France). FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58 (3), pp.550-562. ⟨hal-02589870⟩
81. E.M.S. Brito, R. Guyoneaud, M. Goñi-Urriza, A. Ranchou-Peyruse, A. Verbaere, et al.. Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. Research in Microbiology, Elsevier, 2006, 157 (8), pp.752-762. ⟨10.1016/j.resmic.2006.03.005⟩. ⟨hal-01631902⟩
82. C. Casiot, V. Pedron, O. Bruneel, R. Duran, J.C. Personné, et al.. A new bacterial strain mediating As oxidation in the Fe-rich biofilm naturally growing in a groundwater Fe treatment pilot unit. Chemosphere, Elsevier, 2006, 64 (3), pp.492-496. ⟨10.1016/j.chemosphere.2005.11.072⟩. ⟨hal-01841787⟩
83. R.A. Herbert, Anthony Ranchou-Peyruse, R. Duran, R. Guyoneaud, S. Schwabe. Characterization of purple sulfur bacteria from the South Andros Black Hole cave system: Highlights taxonomic problems for ecological studies among the genera Allochromatium and Thiocapsa. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2005, 7 (8), pp.1260-1268. ⟨10.1111/j.1462-2920.2005.00815.x⟩. ⟨hal-01841791⟩
84. O. Bruneel, R. Duran, K. Koffi, C. Casiot, A. Fourçans, et al.. Microbial diversity in a pyrite-rich tailings impoundment (Carnoulès, France). Geomicrobiology Journal, Taylor & Francis, 2005, 22 (5), pp.249-257. ⟨10.1080/01490450590947805⟩. ⟨hal-01841790⟩
85. R.C. Rodríguez Martín-Doimeadios, Emmanuel Tessier, David Amouroux, Rémy Guyoneaud, R. Duran, et al.. Mercury methylation/demethylation and volatilization pathways in estuarine sediment slurries using species-specific enriched stable isotopes. Marine Chemistry, Elsevier, 2004, 90 (1-4 SPEC. ISS.), pp.107-123. ⟨10.1016/j.marchem.2004.02.022⟩. ⟨hal-01590049⟩
86. S. Precigou, M. Wieser, P. Pommares, P. Goulas, R. Duran. Rhodococcus pyridinovorans MW3, a bacterium producing a nitrile hydratase. Biotechnology Letters, Springer Verlag, 2004, 26 (17), pp.1379-1384. ⟨10.1023/B:BILE.0000045636.47527.99⟩. ⟨hal-01841793⟩
87. S. Bordenave, R. Jézéquel, A. Fourçans, H. Budzinski, F.X. Merlin, et al.. Degradation of the "Erika" oil. Aquatic Living Resources, EDP Sciences, 2004, 17, pp.261-267. ⟨hal-00022642⟩
88. G. Ballihaut, Benjamin Klein, P. Goulas, R. Duran, Pierre Caumette, et al.. Analysis of the adaptation to alkanes of the marine bacterium Marinobacter hydrocarbonoclasticus sp 17 by two dimensional gel electrophoresis. Aquatic Living Resources, EDP Sciences, 2004, 17 (3), pp.269-272. ⟨10.1051/alr:2004030⟩. ⟨hal-01841792⟩
89. S. Bordenave, A. Fourçans, S. Blanchard, Marisol Goñi, Pierre Caumette, et al.. Structure and functional analyses of bacterial communities changes in microbial mats following petroleum exposure. Ophelia, Taylor & Francis, 2004, 58 (3), pp.195-203. ⟨10.1080/00785236.2004.10410227⟩. ⟨hal-01654728⟩
90. A. Fourçans, T.G. de Oteyza, A. Wieland, A. Solé, E. Diestra, et al.. Characterization of functional bacterial groups in a hypersaline microbial mat community (Salins-de-Giraud, Camargue, France). FEMS Microbiology Ecology, Wiley-Blackwell, 2004, 51 (1), pp.55-70. ⟨10.1016/j.femsec.2004.07.012⟩. ⟨hal-01841794⟩
91. A. Wieland, M. Kühl, L. Mcgowan, A. Fourçans, R. Duran, et al.. Microbial Mats on the Orkney Islands Revisited: Microenvironment and Microbial Community Composition. Microbial Ecology, Springer Verlag, 2003, 46 (4), pp.371-390. ⟨10.1007/s00248-002-0108-2⟩. ⟨hal-01841797⟩
92. Robert Duran, V. Menuet, Mathilde Monperrus, Rémy Guyoneaud, M.S. Goni, et al.. Monitoring bacterial communities adaptation to mercury contamination in estuarine sediments maintained in slurries. Journal de Physique IV Proceedings, EDP Sciences, 2003, 107 (I), pp.393-396. ⟨hal-01590054⟩
93. Mathilde Monperrus, Rémy Guyoneaud, Emmanuel Tessier, Robert Duran, M. Goni, et al.. Mercury methylation rates in coastal sediments versus microbial diversity and specific activity. Journal de Physique IV Proceedings, EDP Sciences, 2003, 107 (II), pp.883-886. ⟨hal-01590057⟩
94. R. Duran, C. Deschler, S. Precigou, P. Goulas. Degradation of chlorophenols by Phanerochaete chrysosporium: Effect of 3,4-dichlorophenol on extracellular peroxidase activities. Applied Microbiology and Biotechnology, Springer Verlag, 2002, 59 (2-3), pp.284-288. ⟨10.1007/s00253-002-0988-6⟩. ⟨hal-01841798⟩
95. R. Guyoneaud, S. Mouné, C. Eatock, V. Bothorel, Agnès Hirschler-Réa, et al.. Characterization of three spiral-shaped purple nonsulfur bacteria isolated from coastal lagoon sediments, saline sulfur springs, and microbial mats: Emended description of the genus Roseospira and description of Roseospira marina sp. nov., Roseospira navarrensis sp. nov., and Roseospira thiosulfatophila sp. nov.. Archives of Microbiology, Springer Verlag, 2002, 178 (5), pp.315-324. ⟨10.1007/s00203-002-0454-y⟩. ⟨hal-01841799⟩
96. M. Junqua, J.-P. Biolley, S. Pie, M. Kanoun, R. Duran, et al.. In vivo occurrence of carbonyl residues in Phaseolus vulgaris proteins as a direct consequence of a chronic ozone stress. Plant Physiology and Biochemistry, Elsevier, 2000, 38 (11), pp.853-861. ⟨10.1016/S0981-9428(00)01193-1⟩. ⟨hal-01841801⟩
97. R. Duran, M. Junqua, J.M. Schmitter, C. Gancet, P. Goulas. Purification, characterisation, and gene cloning of transglutaminase from Streptoverticillium cinnamoneum CBS 683.68. Biochimie, Elsevier, 1998, 80 (4), pp.313-319. ⟨10.1016/S0300-9084(98)80073-4⟩. ⟨hal-01841802⟩
98. J.P. Biolley, B. Lauga, Christine Cagnon, R. Duran, J.C. Salvado, et al.. Phenolic pattern of bean (Phaseolus vulgaris L.) as an indicator of chronic ozone stress. Water, Air, and Soil Pollution, Springer Verlag, 1998, 106 (3-4), pp.355-368. ⟨hal-01631814⟩
99. R. Duran. New shuttle vectors for Rhodococcus sp. R312 (formerly Brevibacterium sp. R312), a nitrile hydratase producing strain. Journal of Basic Microbiology, Wiley-VCH Verlag, 1998, 38 (2), pp.101-106. ⟨hal-01841803⟩
100. C. Deschler, R. Duran, M. Junqua, C. Landou, J.-C. Salvado, et al.. Involvement of 3,4-dichlorophenol hydroxylase in degradation of 3,4- dichlorophenol by the white rot fungus Phanerochaete chrysosporium. Journal of Molecular Catalysis B: Enzymatic, Elsevier, 1998, 5 (1-4), pp.423-428. ⟨10.1016/S1381-1177(98)00056-3⟩. ⟨hal-01841804⟩
101. M. Junqua, R. Duran, C. Gancet, P. Goulas. Optimization of microbial transglutaminase production using experimental designs. Applied Microbiology and Biotechnology, Springer Verlag, 1997, 48 (6), pp.730-734. ⟨10.1007/s002530051124⟩. ⟨hal-01841805⟩
102. R. Duran, M. Nishiyama, S. Horinouchi, T. Beppu. Characterization of Nitrile Hydratase Genes Cloned by DNA Screening from Rhodococcus erythropolis. Bioscience, Biotechnology and Biochemistry, Taylor & Francis, 1993, 57 (8), pp.1323-1328. ⟨10.1271/bbb.57.1323⟩. ⟨hal-01841806⟩
103. P. Chagnaud, C.K.N. Chan Kwo Chion, R. Duran, P. Naouri, A. Arnaud, et al.. Construction of a new shuttle vector for Lactobacillus. Canadian Journal of Microbiology, NRC Research Press, 1992, 38 (1), pp.69-74. ⟨10.1139/m92-011⟩. ⟨hal-01841808⟩
104. R. Duran, C.K. Chion, A. Arnaud, P. Galzy. Isolation of promoter sequences from Brevibacterium sp. R312.. Zentralblatt für Mikrobiologie, Elsevier, 1992, 147 (8), pp.499-502. ⟨hal-01841809⟩
105. R. Duran, C.K.N.C.K. Chion, F. Bigey, A. Arnaud, P. Galzy. The N-terminal amino acid sequences of Brevibacterium sp. R312 nitrile hydratase. Applied Microbiology and Biotechnology, Springer Verlag, 1992, 32 (1), pp.13-19. ⟨10.1002/jobm.3620320104⟩. ⟨hal-01841807⟩
106. C.K.N.C.K. Chion, R. Duran, A. Arnaud, P. Galzy. Cloning vectors and antibiotic-resistance markers for Brevibacterium sp. R312. Gene, Elsevier, 1991, 105 (1), pp.119-124. ⟨10.1016/0378-1119(91)90522-D⟩. ⟨hal-01841812⟩
107. C.K.N. Chan Kwo Chion, R. Duran, A. Arnaud, P. Galzy. N-terminal amino acid sequence of Brevibacterium sp. R312 wide-spectrum amidase. Applied Microbiology and Biotechnology, Springer Verlag, 1991, 36 (2), pp.205-207. ⟨10.1007/BF00164420⟩. ⟨hal-01841811⟩
108. C.K.N.C.K. Chion, R. Duran, A. Arnaud, P. Galzy. Electrotransformation of whole cells of Brevibacterium sp. R312 a nitrile hydratase producing strain: Construction of a cloning vector. FEMS Microbiology Letters, Wiley-Blackwell, 1991, 81 (2), pp.177-183. ⟨hal-01841810⟩

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