HALathon 2021 UPPA

Vos documents déjà déposés

Références complètes

1. Vladimir Bermanec, Tina Paradžik, Snježana Kazazić, Chantelle Venter, Jasna Hrenović, et al.. Novel arsenic hyper-resistant bacteria from an extreme environment, Crven Dol mine, Allchar, North Macedonia. Journal of Hazardous Materials, Elsevier, 2021, 402, pp.123437. ⟨10.1016/j.jhazmat.2020.123437⟩. ⟨hal-02920366⟩
2. Tamer Hafez, Dennis Bilbao, Nestor Etxebarria, Robert Duran, Maren Ortiz-Zarragoitia. Application of a biological multilevel response approach in the copepod Acartia tonsa for toxicity testing of three oil Water Accommodated Fractions. Marine Environmental Research, Elsevier, 2021, 169, pp.105378. ⟨10.1016/j.marenvres.2021.105378⟩. ⟨hal-03265401⟩
3. Tibor Benedek, Flóra Szentgyörgyi, Istvan Szabo, Milán Farkas, Robert Duran, et al.. Aerobic and oxygen-limited naphthalene-amended enrichments induced the dominance of Pseudomonas spp. from a groundwater bacterial biofilm. Applied Microbiology and Biotechnology, Springer Verlag, 2020, 104 (13), pp.6023-6043. ⟨10.1007/s00253-020-10668-y⟩. ⟨hal-02734344⟩
4. Jian-Li Liu, Jun Yao, Fei Wang, Ning Min, Ji-Hai Gu, et al.. Bacterial diversity in typical abandoned multi-contaminated nonferrous metal(loid) tailings during natural attenuation. Environmental Pollution, Elsevier, 2019, 247, pp.98-107. ⟨10.1016/j.envpol.2018.12.045⟩. ⟨hal-01999642⟩
5. Jian-Li Liu, Jun Yao, Fei Wang, Wen Ni, Xing-Yu Liu, et al.. China’s most typical nonferrous organic-metal facilities own specific microbial communities. Scientific Reports, Nature Publishing Group, 2018, 8 (1), ⟨10.1038/s41598-018-30519-1⟩. ⟨hal-01917242⟩
6. Camilla Liénart, Nicolas Savoye, Valérie David, Pierre Ramond, Paco Rodriguez Tress, et al.. Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale. Progress in Oceanography, Elsevier, 2018, 162, pp.271-289. ⟨10.1016/j.pocean.2018.02.026⟩. ⟨hal-02329982⟩
7. Kounouz Rachedi, Ferial Zermane, Radja Tir, Fatima Ayache, Robert Duran, et al.. Effect of sulfonylurea tribenuron methyl herbicide on soil Actinobacteria growth and characterization of resistant strains. Brazilian Journal of Microbiology, Sociedade Brasileira de Microbiologia, 2018, 49 (1), pp.79-86. ⟨10.1016/j.bjm.2017.05.004⟩. ⟨hal-01701579⟩
8. F. Ben Salem, O. Ben Said, E. Mahmoudi, R. Duran, M. Monperrus. Distribution of organic contamination of sediments from Ichkeul Lake and Bizerte Lagoon, Tunisia. Marine Pollution Bulletin, Elsevier, 2017, 123 (162), pp.329-338. ⟨10.1016/j.marpolbul.2017.09.024⟩. ⟨hal-01617276⟩
9. Fanny Terrisse, Cristiana Cravo-Laureau, Cyril Noel, Christine Cagnon, A.J. Dumbrell, et al.. Variation of oxygenation conditions on a hydrocarbonoclastic microbial community reveals Alcanivorax and Cycloclasticus ecotypes. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.1549. ⟨10.3389/fmicb.2017.01549⟩. ⟨hal-01631803⟩
10. Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Hélène Agogué, et al.. Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats. Frontiers in Microbiology, Frontiers Media, 2016, 7, pp.1637. ⟨10.3389/fmicb.2016.01637⟩. ⟨hal-01417951⟩
11. R. Duran, Cristiana Cravo-Laureau. Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment. FEMS Microbiology Reviews, Wiley-Blackwell, 2016, 40 (6), pp.814--830. ⟨10.1093/femsre/fuw031⟩. ⟨hal-01495414⟩
12. Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Jean-François Ghiglione, et al.. Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments. Frontiers in Microbiology, Frontiers Media, 2016, 7, pp.1303. ⟨10.3389/fmicb.2016.01303⟩. ⟨hal-01599382v2⟩
13. Aline Dia, Béatrice Lauga, Mélanie Davranche, Anne Fahy, Robert Duran, et al.. Bacteria-mediated reduction of As(V)-doped lepidocrocite in a flooded soil sample. Chemical Geology, Elsevier, 2015, 406, pp.34-44. ⟨10.1016/j.chemgeo.2015.04.008⟩. ⟨insu-01145497⟩
14. J. Abella, A. Fahy, Robert Duran, Christine Cagnon. Integron diversity in bacterial communities of freshwater sediments at different contamination levels. FEMS Microbiology Ecology, Wiley-Blackwell, 2015, 91 (12), ⟨10.1093/femsec/fiv140⟩. ⟨hal-01546721⟩
15. Cécile Militon, Ronan Jezequel, Franck Gilbert, Yannick Corsellis, Léa Sylvi, et al.. Dynamics of bacterial assemblages and removal of polycyclic aromatic hydrocarbons in oil-contaminated coastal marine sediments subjected to contrasted oxygen regimes. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15260-15272. ⟨10.1007/s11356-015-4510-y⟩. ⟨hal-01233392⟩
16. Robert Duran, Philippe Cuny, Patricia Bonin, Cristiana Cravo-Laureau. Microbial ecology of hydrocarbon-polluted coastal sediments.. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (20), pp.15195 - 15199. ⟨10.1007/s11356-015-5373-y⟩. ⟨hal-01208482⟩
17. Denis Faure, Patricia Bonin, Robert Duran, Pierre Amato, Florence Arsene-Ploetze, et al.. Environmental microbiology as a mosaic of explored ecosystems and issues. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (18), pp.13577-13598. ⟨10.1007/s11356-015-5164-5⟩. ⟨hal-01247096⟩
18. A. Volant, O. Bruneel, A. Desoeuvre, M. Héry, C. Casiot, et al.. Diversity and spatiotemporal dynamics of bacterial communities: Physicochemical and other drivers along an acid mine drainage. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 90 (1), pp.247-263. ⟨10.1111/1574-6941.12394⟩. ⟨hal-01631848⟩
19. Cristiana Cravo-Laureau, R. Duran. Marine coastal sediments microbial hydrocarbon degradation processes: Contribution of experimental ecology in the omics'era. Frontiers in Microbiology, Frontiers Media, 2014, 5 (FEB), ⟨10.3389/fmicb.2014.00039⟩. ⟨hal-01631849⟩
20. S.I. Concha-Guerrero, E.M.S. Brito, H.A. Piñón-Castillo, S.H. Tarango-Rivero, C.A. Caretta, et al.. Effect of CuO nanoparticles over isolated bacterial strains from agricultural soil. Journal of Nanomaterials, Hindawi Publishing Corporation, 2014, 2014, ID 148743, 13 p. ⟨10.1155/2014/148743⟩. ⟨hal-01712846⟩
21. M. Stauffert, Cristiana Cravo-Laureau, R. Duran. Structure of hydrocarbonoclastic nitrate-reducing bacterial communities in bioturbated coastal marine sediments. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 89 (3), pp.580--593. ⟨10.1111/1574-6941.12359⟩. ⟨hal-01495820⟩
22. C. Fontanier, K.A. Koho, M.S. Goñi-Urriza, B. Deflandre, S. Galaup, et al.. Benthic foraminifera from the deep-water Niger delta (Gulf of Guinea): Assessing present-day and past activity of hydrate pockmarks. Deep Sea Research Part I: Oceanographic Research Papers, Elsevier, 2014, 94, pp.87-106. ⟨10.1016/j.dsr.2014.08.011⟩. ⟨hal-01631883⟩
23. Magali Stauffert, Cristiana Cravo-Laureau, Ronan Jezequel, Sandra Barantal, Philippe Cuny, et al.. Impact of oil on bacterial community structure in bioturbated sediments. PLoS ONE, Public Library of Science, 2013, vol. 8, pp. 1-15. ⟨10.1371/journal.pone.0065347⟩. ⟨hal-00867612⟩
24. Armelle Paule, V. Roubeix, Béatrice Lauga, Robert Duran, François Delmas, et al.. Changes in tolerance to herbicide toxicity throughout development stages of phototrophic biofilms. Aquatic Toxicology, Elsevier, 2013, vol. 144-145, pp. 310-321. ⟨10.1016/j.aquatox.2013.09.024⟩. ⟨hal-00913088⟩
25. L. Giloteaux, R. Duran, C. Casiot, O. Bruneel, F. Elbaz-Poulichet, et al.. Three-year survey of sulfate-reducing bacteria community structure in Carnoulès acid mine drainage (France), highly contaminated by arsenic. FEMS Microbiology Ecology, Wiley-Blackwell, 2013, 83 (3), pp.724-737. ⟨10.1111/1574-6941.12028⟩. ⟨hal-01631885⟩
26. S. Païssé, M. Goñi-Urriza, T. Stadler, H. Budzinski, R. Duran. Ring-hydroxylating dioxygenase (RHD) expression in a microbial community during the early response to oil pollution. FEMS Microbiology Ecology, Wiley-Blackwell, 2012, 80 (1), pp.77-86. ⟨10.1111/j.1574-6941.2011.01270.x⟩. ⟨hal-01631886⟩
27. F. Coulon, P.-M. Chronopoulou, A. Fahy, S. Païssé, M. Goñi-Urriza, et al.. Central role of dynamic tidal biofilms dominated by aerobic hydrocarbonoclastic bacteria and diatoms in the biodegradation of hydrocarbons in coastal mudflats. Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (10), pp.3638-3648. ⟨10.1128/AEM.00072-12⟩. ⟨hal-01631887⟩
28. R. Grimaud, J.-F. Ghiglione, Christine Cagnon, B. Lauga, P.-J. Vaysse, et al.. Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (13), pp.3539-3540. ⟨10.1128/JB.00500-12⟩. ⟨hal-01643936⟩
29. S. Païssé, R. Duran, F. Coulon, M. Goñi-Urriza. Are alkane hydroxylase genes (alkB) relevant to assess petroleum bioremediation processes in chronically polluted coastal sediments?. Applied Microbiology and Biotechnology, Springer Verlag, 2011, 92 (4), pp.835-844. ⟨10.1007/s00253-011-3381-5⟩. ⟨hal-01631889⟩
30. Armelle Paule, Béatrice Lauga, Loïc Ten-Hage, Jérôme Morchain, Robert Duran, et al.. A photosynthetic rotating annular bioreactor (Taylor-Couette type flow) for phototrophic biofilm cultures. Water Research, IWA Publishing, 2011, vol. 45 (18), pp. 6107-6118. ⟨10.1016/j.watres.2011.09.007⟩. ⟨hal-00908977⟩
31. P.N. Bertin, A. Heinrich-Salmeron, E. Pelletier, F. Goulhen-Chollet, F. Arsène-Ploetze, et al.. Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics. ISME Journal, Nature Publishing Group, 2011, 5 (11), pp.1735-1747. ⟨10.1038/ismej.2011.51⟩. ⟨hal-01631857⟩
32. H.A. Piñon-Castillo, E.M.S. Brito, M. Goñi-Urriza, R. Guyoneaud, R. Duran, et al.. Hexavalent chromium reduction by bacterial consortia and pure strains from an alkaline industrial effluent. Journal of Applied Microbiology, Wiley, 2010, 109 (6), pp.2173-2182. ⟨10.1111/j.1365-2672.2010.04849.x⟩. ⟨hal-01631892⟩
33. L. Giloteaux, M. Goñi-Urriza, R. Duran. Nested PCR and new primers for analysis of sulfate-reducing bacteria in low-cell-biomass environments. Applied and Environmental Microbiology, American Society for Microbiology, 2010, 76 (9), pp.2856-2865. ⟨10.1128/AEM.02023-09⟩. ⟨hal-01631891⟩
34. L. Huang, Christine Cagnon, Pierre Caumette, R. Duran. First gene cassettes of integrons as targets in finding adaptive genes in metagenomes. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (11), pp.3823-3825. ⟨10.1128/AEM.02394-08⟩. ⟨hal-01631808⟩
35. S. Païssé, F. Coulon, M. Goñi-Urriza, L. Peperzak, T.J. Mcgenity, et al.. Structure of bacterial communities along a hydrocarbon contamination gradient in a coastal sediment. FEMS Microbiology Ecology, Wiley-Blackwell, 2008, 66 (2), pp.295-305. ⟨10.1111/j.1574-6941.2008.00589.x⟩. ⟨hal-01631900⟩
36. M.S. Goñi-Urriza, David Point, David Amouroux, Rémy Guyoneaud, O.F.X. Donard, et al.. Bacterial community structure along the Adour estuary (French Atlantic coast): Influence of salinity gradient versus metal contamination. Aquatic Microbial Ecology, Inter Research, 2007, 49 (1), pp.47-56. ⟨10.3354/ame01128⟩. ⟨hal-01590331⟩
37. S. Bordenave, M.S. Goñi-Urriza, Pierre Caumette, Robert Duran. Effects of heavy fuel oil on the bacterial community structure of a pristine microbial mat. Applied and Environmental Microbiology, American Society for Microbiology, 2007, 73 (19), pp.6089-6097. ⟨10.1128/AEM.01352-07⟩. ⟨hal-01631901⟩
38. Pierre Caumette, R. Guyoneaud, Robert Duran, Cristiana Cravo-Laureau, R. Matheron. Rhodobium pfennigii sp. nov., a phototrophic purple non-sulfur bacterium with unusual bacteriochlorophyll a antennae, isolated from a brackish microbial mat on Rangiroa atoll, French Polynesia. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2007, 57 (6), pp.1250-1255. ⟨10.1099/ijs.0.64775-0⟩. ⟨hal-01631862⟩
39. G. Hernandez-Raquet, H. Budzinski, Pierre Caumette, P. Dabert, K. Le Ménach, et al.. Molecular diversity studies of bacterial communities of oil polluted microbial mats from the Etang de Berre (France). FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58 (3), pp.550-562. ⟨10.1111/j.1574-6941.2006.00187.x⟩. ⟨hal-01841789⟩
40. A. Fourçans, A. Solé, E. Diestra, Anthony Ranchou-Peyruse, I. Esteve, et al.. Vertical migration of phototrophic bacterial populations in a hypersaline microbial mat from Salins-de-Giraud (Camargue, France). FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 57 (3), pp.367-377. ⟨10.1111/j.1574-6941.2006.00124.x⟩. ⟨hal-01841788⟩
41. O. Bruneel, R. Duran, C. Casiot, F. Elbaz-Poulichet, J.-C. Personné. Diversity of microorganisms in Fe-As-rich acid mine drainage waters of Carnoulès, France. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (1), pp.551-556. ⟨10.1128/AEM.72.1.551-556.2006⟩. ⟨hal-01841786⟩
42. D. Paillard, V. Dubois, R. Duran, F. Nathier, C. Guittet, et al.. Rapid Identification of Listeria Species by Using Restriction Fragment Length Polymorphism of PCR-Amplified 23S rRNA Gene Fragments. Applied and Environmental Microbiology, American Society for Microbiology, 2003, 69 (11), pp.6386-6392. ⟨10.1128/AEM.69.11.6386-6392.2003⟩. ⟨hal-01841796⟩
43. S. Precigou, P. Goulas, R. Duran. Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction. FEMS Microbiology Letters, Wiley-Blackwell, 2001, 204 (1), pp.155-161. ⟨10.1016/S0378-1097(01)00392-5⟩. ⟨hal-01841800⟩
44. R. Duran, D. Guillon, Ph. Gramain, A. Skoulios. Smectic E side-chain liquid crystalline poly(methacrylates). Journal de Physique, 1988, 49 (8), pp.1455-1466. ⟨10.1051/jphys:019880049080145500⟩. ⟨jpa-00210826⟩
45. R. Duran, D. Guillon, Ph. Gramain, A. Skoulios. Thermal properties of a series of side-chain liquid crystalline poly(methacrylates). Journal de Physique, 1988, 49 (1), pp.121-129. ⟨10.1051/jphys:01988004901012100⟩. ⟨jpa-00210666⟩
46. R. Duran, D. Guillon, Ph. Gramain, A. Skoulios. Liquid crystals from poly(4,4'-methoxybiphenylyl methacrylate). Journal de Physique, 1987, 48 (12), pp.2043-2047. ⟨10.1051/jphys:0198700480120204300⟩. ⟨jpa-00210650⟩
47. Fabrice Martin-Laurent, Robert Duran, Vivienne Gianinazzi-Pearson, Pascal Guilbaut, Beatrice Lauga, et al.. Bioindicators for the assessment of side effects of pesticides on soil biological status: report of a collaborative study conducted for the french ministry of the environment. 6. European Conference on Pesticides and Related Organic Micropolluants in the Environment, Sep 2010, Matera, Italy. ⟨hal-02757675⟩
48. Cristiana Cravo-Laureau, Christine Cagnon, Béatrice Lauga, Robert Duran. Microbial Ecotoxicology. Cravo-Laureau, C., Cagnon, C., Duran, R., Lauga, B. Springer International Publishing, 2017, 978-3-319-61795-4. ⟨10.1007/978-3-319-61795-4⟩. ⟨hal-01632247⟩
49. Vanessa Rouaud, Nicolas Susperregui, Remy Guyoneaud, Philippe Gaudin, Robert Duran, et al.. Dynamics of microbial communities across the three domains of life in the Bay of Biscay with emphasis on marine mucilage. ISOBAY 16. 16.International Symposium on Oceanography of the Bay of Biscay, Jun 2018, Anglet, France. 167 p., 2018, Book of Abstracts. Isobay 16. ⟨hal-02734154⟩

---

Des remarques, des corrections ou des questions ? Contactez-nous ::: hal@univ-pau.fr ::: (Gaëlle, Marina, Julien) ::: HALathon, mode d'emploi :::

---